Atsushi Niida : rechercher sur Z-Library

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1

A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models

Hasegawa, Takanori, Niida, Atsushi, Mori, Tomoya, Shimamura, Teppei, Yamaguchi, Rui, Miyano, Satoru, Akutsu, Tatsuya, Imoto, Seiya

Journal:

Computational Statistics & Data Analysis

Année:

2016

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2016

2

A novel cell-cycle-indicator, mVenus-p27K−, identifies quiescent cells and visualizes G0–G1 transition

Oki, Toshihiko, Nishimura, Koutarou, Kitaura, Jiro, Togami, Katsuhiro, Maehara, Akie, Izawa, Kumi, Sakaue-Sawano, Asako, Niida, Atsushi, Miyano, Satoru, Aburatani, Hiroyuki, Kiyonari, Hiroshi, Miyawak

Journal:

Scientific Reports

Année:

2014

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2014

3

Human homolog of NOTUM, overexpressed in hepatocellular carcinoma, is regulated transcriptionally by β-catenin/TCF

Yuichi Torisu, Akira Watanabe, Aya Nonaka, Yutaka Midorikawa, Masatoshi Makuuchi, Takahiro Shimamura, Haruhiko Sugimura, Atsushi Niida, Tetsu Akiyama, Hiroko Iwanari, Tatsuhiko Kodama, Mikio Zeniya, H

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 285 KB

english, 2008

4

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light

Miyako Kusano, Takayuki Tohge, Atsushi Fukushima, Makoto Kobayashi, Naomi Hayashi, Hitomi Otsuki, Youichi Kondou, Hiroto Goto, Mika Kawashima, Fumio Matsuda, Rie Niida, Minami Matsui, Kazuki Saito, Al

Journal:

The Plant Journal

Année:

2011

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2011

5

DKK1, a negative regulator of Wnt signaling, is a target of the β-catenin/TCF pathway

Niida, Atsushi, Hiroko, Takatoshi, Kasai, Mana, Furukawa, Yoichi, Nakamura, Yusuke, Suzuki, Yutaka, Sugano, Sumio, Akiyama, Tetsu

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 295 KB

english, 2004

6

Orientation and deformation of mineral crystals in tooth surfaces

Kazuhiro Fujisaki, Masahiro Todoh, Atsushi Niida, Ryota Shibuya, Shunsuke Kitami, Shigeru Tadano

Journal:

Journal of the Mechanical Behavior of Biomedical Materials

Année:

2012

Langue:

english

Fichier:

PDF, 899 KB

english, 2012

7

Gene set-based module discovery in the breast cancer transcriptome

Atsushi Niida, Andrew D Smith, Seiya Imoto, Hiroyuki Aburatani, Michael Q Zhang, Tetsu Akiyama

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 818 KB

english, 2009

8

Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells

Atsushi Niida, Andrew D Smith, Seiya Imoto, Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q Zhang, Tetsu Akiyama

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 779 KB

english, 2008

9

Impaired Vibration of Auditory Ossicles in Osteopetrotic Mice

Sho Kanzaki, Yasunari Takada, Shumpei Niida, Yoshihiro Takeda, Nobuyuki Udagawa, Kaoru Ogawa, Nobuhito Nango, Atsushi Momose, Koichi Matsuo

Journal:

The American Journal of Pathology

Année:

2011

Langue:

english

Fichier:

PDF, 3.11 MB

english, 2011

10

USAG-1: a bone morphogenetic protein antagonist abundantly expressed in the kidney

Motoko Yanagita, Masako Oka, Tetsuro Watabe, Haruhisa Iguchi, Atsushi Niida, Satoru Takahashi, Tetsu Akiyama, Kohei Miyazono, Masashi Yanagisawa, Takeshi Sakurai

Journal:

Biochemical and Biophysical Research Communications

Année:

2004

Langue:

english

Fichier:

PDF, 2.89 MB

english, 2004

11

Urinary γ-glutamyltransferase (GGT) as a potential marker of bone resorption

Yutaro Asaba, Kiyoshi Hiramatsu, Yasumoto Matsui, Atsushi Harada, Yuji Nimura, Nobuyoshi Katagiri, Toshihiro Kobayashi, Tsuyoshi Takewaka, Masako Ito, Shumpei Niida, Kyoji Ikeda

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 658 KB

english, 2006

12

Proteomic analysis of the mutant Notch3-expressing cells and the microvessels of CADASIL brain

Atsushi Watanabe, Shohko Kunimoto, Kayo Adachi, Kazuya Takeda, Shumpei Niida, Hideaki Wakita, Raj N. Kalaria, Keikichi Takahashi

Journal:

Alzheimer's & Dementia

Année:

2010

Langue:

english

Fichier:

PDF, 59 KB

english, 2010

13

Genome Informatics Series [Imperial College Press Genome Informatics 2009 - 9th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2009) - Boston University, Boston, USA (2009.07.27-2009.07.29)] Genome Informatics 2009 - Proceedings of the 9th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2009) - A NOVEL META-ANALYSIS APPROACH OF CANCER TRANSCRIPTOMES REVEALS PREVAILING TRANSCRIPTIONAL NETWORKS IN CANCER CELLS

NIIDA, ATSUSHI, IMOTO, SEIYA, NAGASAKI, MASAO, YAMAGUCHI, RUI, MIYANO, SATORU

Année:

2010

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2010

14

The rs6983267 SNP Is Associated withMYCTranscription Efficiency, Which Promotes Progression and Worsens Prognosis of Colorectal Cancer

Takatsuno, Yasushi, Mimori, Koshi, Yamamoto, Ken, Sato, Tetsuya, Niida, Atsushi, Inoue, Hiroshi, Imoto, Seiya, Kawano, Shuhei, Yamaguchi, Rui, Toh, Hiroyuki, Iinuma, Hisae, Ishimaru, Shinya, Ishii, Hi

Journal:

Annals of Surgical Oncology

Année:

2013

Langue:

english

Fichier:

PDF, 789 KB

english, 2013

15

Allelic Imbalance at an 8q24 Oncogenic SNP is Involved in Activating MYC in Human Colorectal Cancer

Sugimachi, Keishi, Niida, Atsushi, Yamamoto, Ken, Shimamura, Teppei, Imoto, Seiya, Iinuma, Hisae, Shinden, Yoshiaki, Eguchi, Hidetoshi, Sudo, Tomoya, Watanabe, Masahiko, Tanaka, Junichi, Kudo, Shinei,

Journal:

Annals of Surgical Oncology

Année:

2014

Langue:

english

Fichier:

PDF, 515 KB

english, 2014

16

Loss ofCDCP1Expression Promotes Invasiveness and Poor Prognosis in Esophageal Squamous Cell Carcinoma

Sawada, Genta, Takahashi, Yusuke, Niida, Atsushi, Shimamura, Teppei, Kurashige, Junji, Matsumura, Tae, Ueo, Hiroki, Uchi, Ryutaro, Takano, Yuki, Ueda, Masami, Hirata, Hidenari, Sakimura, Shotaro, Shin

Journal:

Annals of Surgical Oncology

Année:

2014

Langue:

english

Fichier:

PDF, 2.63 MB

english, 2014

17

[IEEE 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - HongKong, China (2010.12.18-2010.12.18)] 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Network profiling analysis for generating modulator-dependent gene networks

Shimamura, Teppei, Imoto, Seiya, Niida, Atsushi, Nagasaki, Masao, Yamaguchi, Rui, Miyano, Satoru

Année:

2010

Langue:

english

Fichier:

PDF, 277 KB

english, 2010

18

[IEEE 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Hong Kong, China (2010.12.18-2010.12.21)] 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning

Kawano, Shuichi, Shimamura, Teppei, Niida, Atsushi, Imoto, Seiya, Yamaguchi, Rui, Nagasaki, Masao, Yoshida, Ryo, Printe, Cristin, Miyano, Satoru

Année:

2010

Langue:

english

Fichier:

PDF, 217 KB

english, 2010

19

Mutational landscape and clonal architecture in grade II and III gliomas

Suzuki, Hiromichi, Aoki, Kosuke, Chiba, Kenichi, Sato, Yusuke, Shiozawa, Yusuke, Shiraishi, Yuichi, Shimamura, Teppei, Niida, Atsushi, Motomura, Kazuya, Ohka, Fumiharu, Yamamoto, Takashi, Tanahashi, K

Journal:

Nature Genetics

Année:

2015

Langue:

english

Fichier:

PDF, 5.55 MB

english, 2015

20

Large-scale experiments on tsunami-induced pressure on a vertical tide wall

Kihara, Naoto, Niida, Yasuo, Takabatake, Daisuke, Kaida, Hideki, Shibayama, Atsushi, Miyagawa, Yoshinori

Journal:

Coastal Engineering

Année:

2015

Langue:

english

Fichier:

PDF, 7.44 MB

english, 2015

21

The Tumor-Suppressive miR-497-195 Cluster Targets Multiple Cell-Cycle Regulators in Hepatocellular Carcinoma

Furuta, Mayuko, Kozaki, Ken-ichi, Tanimoto, Kousuke, Tanaka, Shinji, Arii, Shigeki, Shimamura, Teppei, Niida, Atsushi, Miyano, Satoru, Inazawa, Johji, Deb, Sumitra

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.80 MB

english, 2013

22

Delphinidin, One of the Major Anthocyanidins, Prevents Bone Loss through the Inhibition of Excessive Osteoclastogenesis in Osteoporosis Model Mice

Moriwaki, Sawako, Suzuki, Keiko, Muramatsu, Masashi, Nomura, Atsushi, Inoue, Fumihide, Into, Takeshi, Yoshiko, Yuji, Niida, Shumpei, Wani, Mohan R.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 742 KB

english, 2014

23

Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population

Sawada, Genta, Niida, Atsushi, Uchi, Ryutaro, Hirata, Hidenari, Shimamura, Teppei, Suzuki, Yutaka, Shiraishi, Yuichi, Chiba, Kenichi, Imoto, Seiya, Takahashi, Yusuke, Iwaya, Takeshi, Sudo, Tomoya, Hay

Journal:

Gastroenterology

Année:

2016

Langue:

english

Fichier:

PDF, 4.11 MB

english, 2016

24

Proteomic analysis of ligamentum flavum from patients with lumbar spinal stenosis

Kamita, Masahiro, Mori, Taiki, Sakai, Yoshihito, Ito, Sadayuki, Gomi, Masahiro, Miyamoto, Yuko, Harada, Atsushi, Niida, Shumpei, Yamada, Tesshi, Watanabe, Ken, Ono, Masaya

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1022 KB

english, 2015

25

8q24 Polymorphisms and Diabetes Mellitus Regulate Apolipoprotein A-IV in Colorectal Carcinogenesis

Sugimachi, Keishi, Yamaguchi, Rui, Eguchi, Hidetoshi, Ueda, Masami, Niida, Atsushi, Sakimura, Shotaro, Hirata, Hidenari, Uchi, Ryutaro, Shinden, Yoshiaki, Iguchi, Tomohiro, Morita, Kazutoyo, Yamamoto,

Journal:

Annals of Surgical Oncology

Année:

2016

Langue:

english

Fichier:

PDF, 581 KB

english, 2016

26

Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level

Park, Heewon, Niida, Atsushi, Imoto, Seiya, Miyano, Satoru

Journal:

Journal of Computational Biology

Année:

2016

Langue:

english

Fichier:

PDF, 481 KB

english, 2016

27

Integrated Molecular Profiling of Human Gastric Cancer Identifies DDR2 as a Potential Regulator of Peritoneal Dissemination

Kurashige, Junji, Hasegawa, Takanori, Niida, Atsushi, Sugimachi, Keishi, Deng, Niantao, Mima, Kosuke, Uchi, Ryutaro, Sawada, Genta, Takahashi, Yusuke, Eguchi, Hidetoshi, Inomata, Masashi, Kitano, Seig

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 2.46 MB

english, 2016

28

Palindromic amplification of the ERBB2 oncogene in primary HER2-positive breast tumors

Marotta, Michael, Onodera, Taku, Johnson, Jeffrey, Budd, G. Thomas, Watanabe, Takaaki, Cui, Xiaojiang, Giuliano, Armando E., Niida, Atsushi, Tanaka, Hisashi

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 2.94 MB

english, 2017

29

Personalized Management of Pancreatic Ductal Adenocarcinoma Patients Through Computational Modeling

Yamamoto, Kimiyo N, Yachida, Shinichi, Nakamura, Akira, Niida, Atsushi, Oshima, Minoru, De, Subhajyoti, Rosati, Lauren M, Herman, Joseph M., Iacobuzio-Donahue, Christine A, Haeno, Hiroshi

Journal:

Cancer Research

Année:

2017

Langue:

english

Fichier:

PDF, 915 KB

english, 2017

30

Japanese genome-wide association study identifies a significant colorectal cancer susceptibility locus at chromosome 10p14

Takahashi, Yusuke, Sugimachi, Keishi, Yamamoto, Ken, Niida, Atsushi, Shimamura, Teppei, Sato, Tetsuya, Watanabe, Masahiko, Tanaka, Junichi, Kudo, Shinei, Sugihara, Kenichi, Hase, Kazuo, Kusunoki, Masa

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 592 KB

english, 2017

31

Diffusion tensor imaging and magnetic resonance spectroscopy in a patient with adult onset tuberous sclerosis complex

Ishikawa, Hidehiro, Niwa, Atsushi, Asahi, Masaru, Matsuura, Keita, Masuzugawa, Satoshi, Niida, Yo, Maeda, Masayuki, Kondo, Mineo, Tomimoto, Hidekazu

Journal:

Journal of Clinical Neuroscience

Année:

2017

Langue:

english

Fichier:

PDF, 647 KB

english, 2017

32

Impediment of Replication Forks by Long Non-coding RNA Provokes Chromosomal Rearrangements by Error-Prone Restart

Watanabe, Takaaki, Marotta, Michael, Suzuki, Ryusuke, Diede, Scott J., Tapscott, Stephen J., Niida, Atsushi, Chen, Xiongfong, Mouakkad, Lila, Kondratova, Anna, Giuliano, Armando E., Orsulic, Sandra, T

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.73 MB

english, 2017

33

Combined mutation of Apc, Kras and Tgfbr2 effectively drives metastasis of intestinal cancer

Sakai, Eri, Nakayama, Mizuho, Oshima, Hiroko, Kouyama, Yuta, Niida, Atsushi, Fujii, Satoshi, Ochiai, Atsushi, Nakayama, Keiichi I, Mimori, Koshi, Suzuki, Yutaka, Hong, Chang Pyo, Ock, Chan-Young, Kim,

Journal:

Cancer Research

Année:

2017

Langue:

english

Fichier:

PDF, 4.84 MB

english, 2017

34

Understanding intratumor heterogeneity by combining genome analysis and mathematical modeling

Niida, Atsushi, Nagayama, Satoshi, Miyano, Satoru, Mimori, Koshi

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 888 KB

english, 2018

35

TECHNIQUE OF PLANNING AND EVALUATION OF THE FACILITIES OF RAINWATER STORAGE AND INFILTRATION

MINAMI, Kenta, NIIDA, Hiroshi, JINNO, Kenji, TUTUMI, Atsushi, HIROSHIRO, Yoshinari, SHIMOOSAKO, Hiroshi, HAMAZATO, Manabu, IZUMIYA, Takashi

Journal:

PROCEEDINGS OF HYDRAULIC ENGINEERING

Année:

2005

Fichier:

PDF, 1.04 MB

2005

36

Variation of fresh-saline water interface in a coastal aquifer influenced by rainwater infiltration and groundwater extraction

OHASHI, Nobuyuki, HIROSHIRO, Yoshinari, TSUTSUMI, Atsushi, JINNO, Kenji, NIIDA, Hiroshi

Journal:

Journal of Groundwater Hydrology

Année:

2005

Langue:

english

Fichier:

PDF, 19.91 MB

english, 2005

37

2SD-04 Large scale gene network estimation with K computer(2SD Supercomputing in Molecular Network to Cellular Dynamics,Symposium,The 50th Annual Meeting of the Biophysical Society of Japan)

Tamada, Yoshinori, Shimamura, Teppei, Yamaguchi, Rui, Niida, Atsushi, Saito, Ayumu, Kataoka, Yuto, Imoto, Seiya, Nagasaki, Masao, Miyano, Satoru

Journal:

Seibutsu Butsuri

Année:

2012

Langue:

english

Fichier:

PDF, 218 KB

english, 2012

38

ESTIMATION OF RESIDENCE TIME AND CATCHMENT AREA OF SPRING WATER USING GEOCHEMICAL APPROACH BY 222Rn TRITIUM AND GROUNDWATER FLOW MODEL

MATSUMOTO, Masataka, HIROSHIRO, Yoshinari, TSUTSUMI, Atsushi, JINNO, Kenji, NIIDA, Hiroshi

Journal:

PROCEEDINGS OF HYDRAULIC ENGINEERING

Année:

2005

Fichier:

PDF, 1.03 MB

2005

39

phyC: Clustering cancer evolutionary trees

Matsui, Yusuke, Niida, Atsushi, Uchi, Ryutaro, Mimori, Koshi, Miyano, Satoru, Shimamura, Teppei, Markowetz, Florian

Journal:

PLoS Computational Biology

Année:

2017

Langue:

english

Fichier:

PDF, 5.81 MB

english, 2017

40

Gene Set-Based Module Discovery Decodes cis-Regulatory Codes Governing Diverse Gene Expression across Human Multiple Tissues

Niida, Atsushi, Imoto, Seiya, Yamaguchi, Rui, Nagasaki, Masao, Miyano, Satoru, Di Bernardo, Diego

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2010

41

A Novel Network Profiling Analysis Reveals System Changes in Epithelial-Mesenchymal Transition

Shimamura, Teppei, Imoto, Seiya, Shimada, Yukako, Hosono, Yasuyuki, Niida, Atsushi, Nagasaki, Masao, Yamaguchi, Rui, Takahashi, Takashi, Miyano, Satoru, Bernhard, Eric J.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2011

42

Cancer evolution and heterogeneity

Mimori, Koshi, Saito, Tomoko, Niida, Atsushi, Miyano, Satoru

Journal:

Annals of Gastroenterological Surgery

Année:

2018

Langue:

english

Fichier:

PDF, 784 KB

english, 2018

43

Neutral Theory in Cancer Cell Population Genetics

Niida, Atsushi, Iwasaki, Watal M, Innan, Hideki, Kumar, Sudhir

Journal:

Molecular Biology and Evolution

Année:

2018

Langue:

english

Fichier:

PDF, 359 KB

english, 2018

44

A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer

Saito, Tomoko, Niida, Atsushi, Uchi, Ryutaro, Hirata, Hidenari, Komatsu, Hisateru, Sakimura, Shotaro, Hayashi, Shuto, Nambara, Sho, Kuroda, Yosuke, Ito, Shuhei, Eguchi, Hidetoshi, Masuda, Takaaki, Sug

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2018

45

Serial mutational tracking in surgically resected locally advanced colorectal cancer with neoadjuvant chemotherapy

Sugimachi, Keishi, Sakimura, Shotaro, Kuramitsu, Shotaro, Hirata, Hidenari, Niida, Atsushi, Iguchi, Tomohiro, Eguchi, Hidetoshi, Masuda, Takaaki, Morita, Masaru, Toh, Yasushi, Maehara, Yoshihiko, Suzu

Journal:

British Journal of Cancer

Année:

2018

Langue:

english

Fichier:

PDF, 539 KB

english, 2018

46

Multiregion Genomic Analysis of Serially Transplanted Patient-derived Xenograft Tumors

SATO, KUNIAKI, NIIDA, ATSUSHI, MASUDA, TAKAAKI, SHIMIZU, DAI, TOBO, TARO, KURODA, YOUSUKE, EGUCHI, HIDETOSHI, NAKAGAWA, TAKASHI, SUZUKI, YUTAKA, MIMORI, KOSHI

Journal:

Cancer genomics & proteomics

Année:

2019

Langue:

english

Fichier:

PDF, 312 KB

english, 2019

47

A clinical trial of somatic and germline analyses for healthy longevity in a postoperative cancer patient

Hayashi, Naoki, Kuroda, Yosuke, Saito, Tomoko, Tsuruda, Yusuke, Niida, Atsushi, Otsu, Hajime, Eguchi, Hidetoshi, Masuda, Takaaki, Suzuki, Yutaka, Natsugoe, Shoji, Mimori, Koshi

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2019

48

Prenatal diagnosis facilitated prompt enzyme replacement therapy for prenatal benign hypophosphatasia

Ishijima, Yuka, Iizuka, Takashi, Kagami, Kyosuke, Masumoto, Sakiko, Nakade, Kyohei, Mitani, Yusuke, Niida, Yo, Watanabe, Atsushi, Yamazaki, Rena, Ono, Masanori, Fujiwara, Hiroshi

Journal:

Journal of Obstetrics & Gynaecology

Année:

2019

Langue:

english

Fichier:

PDF, 639 KB

english, 2019

49

MicroRNA transcriptome analysis on hypertrophy of ligamentum flavum in patients with lumbar spinal stenosis

Mori, Taiki, Sakai, Yoshihito, Kayano, Mitsunori, Matsuda, Akio, Oboki, Keisuke, Matsumoto, Kenji, Harada, Atsushi, Niida, Shumpei, Watanabe, Ken

Journal:

Spine Surgery and Related Research

Année:

2017

Langue:

english

Fichier:

PDF, 325 KB

english, 2017

50

MicroRNA transcriptome analysis on hypertrophy of ligamentum flavum in patients with lumbar spinal stenosis

Mori, Taiki, Sakai, Yoshihito, Kayano, Mitsunori, Matsuda, Akio, Oboki, Keisuke, Matsumoto, Kenji, Harada, Atsushi, Niida, Shumpei, Watanabe, Ken

Journal:

Spine Surgery and Related Research

Année:

2017

Fichier:

PDF, 325 KB

2017